Siple MC and TB Francis. 2015. Population diversity in Pacific herring of the Puget Sound, USA. Oecologia doi 10.1007/s00442-015-3439-7

Shelton AO, Francis TB, Williams GD, Feist B, Stick K, Levin PS. 2014. Habitat limitation and spatial variation in Pacific herring egg survival. MEPS 514: 231-245. doi: 10.3354/meps10941.

Francis TB, Wolkovich EM, Scheuerell MD, Katz SL, Holmes EE, Hampton SE. 2014. Shifting Regimes and Changing Interactions in the Lake Washington, U.S.A., Plankton Community from 1962–1994. PLoS ONE 9(10): e110363. doi:10.1371/journal.pone.0110363

Carey, M.P, Levin, P.S., Townsend, H.T., Minello, T.J., Sutton, G.R., Francis, T.B., Harvey, C.J, Toft, J.E., Arkema, K.K, Burke, J.L., Kim, C., Guerry, A., Plummer, M., Spiridonov, G. and M. Ruckelshaus. 2013. Characterizing coastal food webs with qualitative links to bridge the gap between the theory and practice of ecosystem based management. ICES J. of Mar. Sci. doi:10.1093/icesjms/fst012.

Francis, T.B., M.D. Scheuerell, R.D. Brodeur, P.S. Levin, J.J., Ruzicka, N. Tolimieri and W.T. Peterson. 2012. Climate shifts the interaction web of a marine plankton community. Global Change Biology 18: 2498-­‐2508. doi: 10.1111/j.1365-­‐2486.2012.02702.x.

Schindler, D.E., J.L. Carter, T.B. Francis, et al. 2012. Mysis in the Okanagan Lake food web: a time-­series analysis of interaction strengths in an invaded plankton community. Aquatic Ecology 46: 215-­227.

Francis, T.B., D.E. Schindler, G.W. Holtgrieve, E.R. Larson, M.D. Scheuerell, B.X. Semmens and E.J. Ward. 2011. Habitat structure determines resource use by zooplankton in temperate lakes. Ecology Letters 14(4): 364-­372.

Francis, T.B., C.J. Harvey and P.S. Levin. 2011. The perils and promise of futures analysis in
marine ecosystem-­‐based management. Marine Policy 35:675-­681.

Francis, T.B., contributor in Levin, P. S., F. B. Schwing. (Eds.) 2011. Technical background for an integrated ecosystem assessment of the California Current: Groundfish, salmon, green sturgeon, and ecosystem health. U.S. Dept. of Commerce, NOAA Tech. Memo. NMFS-­NWFSC-­109, 330 p.

Harvey, C. J., KK. Bartz, J. Davies, T.B. Francis, T.P. Good, A.D. Guerry, B. Hanson, K.K. Holsman, J. Miller, M.L. Plummer, J.C.P. Reum, L.D. Rhodes, C.A. Rice, J.F. Samhouri, G.D. Williams, N. Yoder, P.S. Levin and M.H. Ruckelshaus. 2010. A mass-­‐balance model for evaluating food web structure and community-­‐scale indicators in the Central Basin of Puget Sound. NOAA Technical Memorandum NMFS-­NWFSC-­106.

Levin, P.S., T.B. Francis, et al. 2010. Understanding future and desired system states, Chapter 1A in Puget Sound Science Update, Puget Sound Partnership, 144 p.

Francis, T.B. and D.E. Schindler. 2009. Shoreline urbanization reduces terrestrial insect subsidies to fishes in North American lakes. Oikos 118(12): 1872-­1882.

Mills, A., T.B. Francis, V. Shandas, K. Whittaker, and J.K. Graybill. 2008. Using best available science to protect critical areas in Washington state: challenges and barriers to planners. Urban Ecosystems 11(4).

Francis, T.B., D.E. Schindler, J.M. Fox, E. Seminet-­Reneau. 2007. Effects of urbanization on the dynamics of organic sediments in temperate lakes. Ecosystems 10: 1057-­1068.

Francis, T.B. and D.E. Schindler. 2006. Degradation of littoral habitats by residential development: woody debris in lakes of the Pacific Northwest and Midwest, United States. Ambio 35: 274-­280

Francis, T.B., D.E. Schindler and J.W. Moore. 2006. Aquatic insects play a minor role in dispersing salmon-­derived nutrients into riparian forests in southwestern Alaska. Canadian Journal of Fisheries and Aquatic Sciences 63: 2543­‐2552.

Francis, T.B. “Eurasian watermilfoil” in Boersma, P. D., S. E. Reichard, and A. N. Van Buren (eds.). Invasive Species in the Pacific Northwest. Seattle and London: University of Washington Press, 2006.

Francis, T.B., K.A. Whittaker, V. Shandas, A. Mills and J.K. Graybill. 2005. Incorporating science into the environmental policy process: A case study from Washington State. Ecology and Society 10(1): 35.

Schindler, D.E., M.D. Scheuerell, J.W. Moore, S.M. Gende, T.B. Francis and W.J.Palen. 2003. Pacific salmon and the ecology of coastal ecosystems. Frontiers in Ecology and the Environment 1(1): 31-­37.

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